MutationCaller object
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.. automodule:: isomut2py.mutationcalling

.. autoclass:: MutationCaller
   :members: run_isomut2_mutdet, optimize_results, load_mutations, plot_mutation_counts, plot_hierarchical_clustering, calculate_SNV_spectrum, plot_SNV_spectrum, calculate_and_plot_SNV_spectrum, calculate_indel_spectrum, plot_indel_spectrum, calculate_and_plot_indel_spectrum, calculate_DNV_matrix, plot_DNV_heatmap, calculate_and_plot_DNV_heatmap, calculate_DNV_spectrum, plot_DNV_spectrum, calculate_and_plot_DNV_spectrum, plot_rainfall, check_pileup, get_details_for_mutations, decompose_SNV_spectra, decompose_indel_spectra, decompose_DNV_spectra